In the SAM-BA main window, select the "SDRAM" tab, select the "Enable SDRAM 100MHz" script from the dropdown menu and click Execute. SAM-BA should emit the following messages:

(AT91-ISP v1.10) 34 % SDRAM::initSDRAM_100
-I- Configure PIOD as peripheral (D16/D31)
-I- Init MATRIX to support EBI0 CS1 for SDRAM
-I- Init SDRAM
-I- 1. A minimum pause of 200us is provided to precede any signal toggle
-I- 2. A Precharge All command is issued to the SDRAM
-I- *pSDRAM = 0;
-I- 3. Eight Auto-refresh are provided
-I- *pSDRAM = 0;
-I- *pSDRAM = 0;
-I- *pSDRAM = 0;
-I- *pSDRAM = 0;
-I- *pSDRAM = 0;
-I- *pSDRAM = 0;
-I- *pSDRAM = 0;
-I- *pSDRAM = 0;
-I- 4. A mode register cycle is issued to program the SDRAM parameters
-I- *(pSDRAM+0x20) = 0;
-I- 5. Write refresh rate into SDRAMC refresh timer COUNT register
-I- 6. A Normal Mode Command is provided, 3 clocks after tMRD is set
-I- *pSDRAM = 0;
-I- End of Init_SDRAM_100
(AT91-ISP v1.10) 34 %

Now insert the DataFlash card into the socket at J9. In the SAM-BA main window, select the "DataFlash AT45DB/DBC" tab and in the "Scripts" dropdown menu select "Enable Dataflash (SPI0 CS0)", to program the Dataflash card. Click Execute and SAM-BA should emit the following in the message area:

(AT91-ISP v1.13) 1 % DATAFLASH::Init 0
-I- DATAFLASH::Init 0 (trace level : 4)
-I- Loading applet isp-dataflash-at91sam9263.bin at address 0x20000000
-I- Memory Size : 0x840000 bytes
-I- Buffer address : 0x20002A40
-I- Buffer size: 0x80E80 bytes
-I- Applet initialization done

The actual options and output of SAM-BA may vary according to the version you are using. The behaviour documented here is that of SAM-BA 2.9.

Select "Send BootFile" from the "Scripts" menu and "Execute" it. When the file open dialog appears, select the dataflash_at91sam9263ek.bin file and click "Open". The following output should be seen:

(AT91-ISP v1.13) 1 % GENERIC::SendBootFileGUI
GENERIC::SendFile dataflash_at91sam9263ek.bin at address 0x0
-I- File size : 0x106E byte(s)
-I-     Writing: 0x106E bytes at 0x0 (buffer addr : 0x20002A40)
-I-     0x106E bytes written by applet

Click the "Send File" button. SAM-BA will put up a dialog box while it is writing the file to the DataFlash, and will output something similar to the following in the message area:

(AT91-ISP v1.13) 1 % send_file {DataFlash AT45DB/DCB} "redboot_ROM.bin" 0x8400 0
-I- Send File //bert/Shared/Releng/sam9263ek/redboot_ROM.bin at address 0x8400
GENERIC::SendFile //bert/Shared/Releng/sam9263ek/redboot_ROM.bin at address 0x8400
-I- File size : 0x24290 byte(s)
-I-     Writing: 0x24290 bytes at 0x8400 (buffer addr : 0x20002A40)
-I-     0x24290 bytes written by applet

Shut down SAM-BA and disconnect the USB cable. Press the reset button on the board and something similar to the following should be output on the DEBUG serial line.

RomBOOT
>Start AT91Bootstrap...
+**Warning** FLASH configuration checksum error or invalid key
Use 'fconfig -i' to [re]initialize database
No space to add 'net_device'
AT91_ETH: Waiting for PHY to reset.
AT91_ETH: Waiting for link to come up..
No network interfaces found

RedBoot(tm) bootstrap and debug environment [ROM]
eCosCentric certified release, version v3_0_3 - built 12:56:09, Sep 24 2009

Copyright (C) 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009
Free Software Foundation, Inc.
Copyright (C) 2003, 2004, 2005, 2006, 2007, 2008 eCosCentric Limited
RedBoot is free software, covered by the eCos license, derived from the
GNU General Public License. You are welcome to change it and/or distribute
copies of it under certain conditions. Under the license terms, RedBoot's
source code and full license terms must have been made available to you.
Redboot comes with ABSOLUTELY NO WARRANTY.

Platform: AT91SAM9263-EK (ARM9)
RAM: 0x20000000-0x24000000 [0x20035ba8-0x23fff5b0 available]
FLASH: 0x40000000-0x4083ffff, 8192 x 0x420 blocks
RedBoot>

Use the following command to initialize RedBoot's Flash Information System (FIS):

RedBoot> fis init
About to initialize [format] FLASH image system - continue (y/n)? y
*** Initialize FLASH Image System
... Erase from 0x4083fbe0-0x4083ffff: .
... Program from 0x23fffbe0-0x24000000 to 0x4083fbe0: .
RedBoot>

Now configure RedBoot's Flash configuration with the command:

RedBoot> fconfig -i

Remember to substitute the appropriate MAC address for this board at the appropriate step. If a BOOTP/DHCP server is not available, then IP configuration may be set manually. The default server IP address can be set to a PC that will act as a TFTP host for future RedBoot load operations, or may be left unset. The following gives an example configuration:

RedBoot> fconfig -i
Initialize non-volatile configuration - continue (y/n)? y
Run script at boot: false
Use BOOTP for network configuration: false
Gateway IP address: 192.168.7.11
Local IP address: 192.168.7.222
Local IP address mask: 255.255.255.0
Default server IP address: 192.168.7.9
Console baud rate: 115200
DNS domain name: ecoscentric.com
DNS server IP address: 192.168.7.11
Network hardware address [MAC]: 0x00:0x23:0x31:0x37:0x00:0x4e
Update RedBoot non-volatile configuration - continue (y/n)? y
... Erase from 0x4083f7c0-0x4083fbdf: .
... Program from 0x23fff7c0-0x23fffbe0 to 0x4083f7c0: .
RedBoot>